feat: add non-markdown files to metadata endpoints
- Added support for non-markdown files (images, PDFs, code, etc) in vault metadata endpoints - Implemented filesystem scanning for non-markdown files with configurable extension whitelist - Added deduplication by file path to prevent duplicates between Meilisearch and filesystem - Enhanced folder filtering and kind filtering to properly handle non-markdown files - Added validation to remove stale entries not present on disk - Improved logging to track
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